GgaEX1020248 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1073902-1076359:+
Coord C1 exon
chr18:1073902-1074067
Coord A exon
chr18:1074665-1074767
Coord C2 exon
chr18:1076120-1076359
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTGCCTGTTTTGCCTGCAGGTA
3' ss Score
11.22
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTGTGCTTGAGAAGCCTCTAGAGAAAAAGGCTGGCAGAAATTATGGCCCTCCAGGCACCAAGAAGCTCATCTACTTCATCGATGACATGAACATGCCAGCAGTGGATGCATATGGGACGGTGCAGCCCCATACGCTCATCAGGCAGCACCTGGACTATGGGCATTG
Seq A exon
GTATGACAGGACCAAGCTGTCACTGAAGGAGATCACAAACGTGCAGTATGTGTCGTGCATGAACCCAACAGCGGGGAGCTTCACCATCAACCCACGCCTGCAG
Seq C2 exon
CGTCACTTCTGCGTCTTCGCCCTTTCCAGCCCTGGGCAGGACGCCTTGTCCAGGATCTACAGCACCATCTTAATGCAGCACCTGGCAAACAGGAATTTCTCAGGAGCTGTGCAGAAGTCAGCTCAGCAGCTGATCTCCCTGGCCCTGGGCCTGCACCAGAGGGTAGCTGCTGCTTTCCTGCCGACGGCTATCAAGTTCCACTACATTTTCAACCTGAGAGACTTCTCCAATATCTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
PF127752=AAA_7=FE(12.5=100)
C2:
PF127752=AAA_7=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCAGAAATTATGGCCCT
R:
CTGACTTCTGCACAGCTCCTG
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]