RnoEX6047739 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52515083-52518494:-
Coord C1 exon
chr10:52518329-52518494
Coord A exon
chr10:52515775-52515877
Coord C2 exon
chr10:52515083-52515322
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACTGGAGGTATCTATTTCAGGTA
3' ss Score
6.47
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGTCCTGGAGAAACCTCTAGAAAAGAAAGCTGGAAGGAATTATGGCCCTCCAGGTAACAGGAAACTCATCTACTTCATCGATGACATGAACATGCCCGAGGTGGACGCCTATGGGACAGTACAGCCCCACACTGTCATCAGGCAGCACCTAGACTATGGCCACTG
Seq A exon
GTATGATCGGAACAAACTGTCTCTGAAGGAGATCATGAATGTACAGTACATTTCCTGTATGAACCCCACTGCAGGCAGCTTTACCATCAACCCAAGACTCCAG
Seq C2 exon
CGCCACTTCAGTGTGTTTGCCCTCTGCTTCCCAGGAGCTGATGCTCTCTCTTCCATCTATAGCACCATCCTGACCCATCACCTGAAGCTTGGAAACTTCCCCACCACCCTGCAAAAATCCATCCCTTCTCTAATCAACCTGGCTGTCACCTTCCACCAGAAAATTGCCACCACATTTCTGCCCACAGCAATCAAATTTCACTACATCTTCAACCTCAGAGATTTTGCCAATATTTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'54-53,'54-52,55-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
PF127752=AAA_7=FE(12.5=100)
C2:
PF127752=AAA_7=FE(29.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGACATGAACATGCCCGA
R:
TTTCTGGTGGAAGGTGACAGC
Band lengths:
249-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]