DreEX6020684 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10402592-10404562:-
Coord C1 exon
chr6:10404358-10404562
Coord A exon
chr6:10402790-10402955
Coord C2 exon
chr6:10402592-10402694
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTTGTTTGACTGTAGGTG
3' ss Score
7.5
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACTGTATTGGTGCACTCTGCAGAGACAATTTGCTTGACATACTTCATCGAGTTACTTCTGCAGAAGGGGAAGCCAGTGATGCTTGTAGGTAATGCTGGTGTTGGGAAAACTATCCTGGTCTGGGACAAGATTTCCAAACTCAAAGAGGAATTCATGGTTGCCAAAGTGCCATTCAATTACTACACAACTTCAGCTATGTTGCAGC
Seq A exon
GTGTGCTGGAGAAGCCTCTGGAAAAAAAGGCAGGGCGGAACTTTGCTCCTCCTGGTACCAAGAAGCTCATTTACTTTGTAGATGACCTGAATATGCCTGAGGTAGATGCGTATGGCACCGTTCAGCCTCATACCCTTATCAGACAGCACCTTGACTACTCCCACTG
Seq C2 exon
GTATGACCGTCAGAGACTAGTCCTCAAGGAGATTCATAACTGTCAGTACATCACCTGTATGAACCCAACAGCAGGAAGCTTTTCAATTAACCCTCGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.1=100)
A:
PF127752=AAA_7=FE(20.3=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGGGAAGCCAGTGATG
R:
CTGCAGACGAGGGTTAATTGA
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]