GgaEX7009568 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10085504-10086183:+
Coord C1 exon
chr18:10085504-10085711
Coord A exon
chr18:10085788-10085953
Coord C2 exon
chr18:10086081-10086183
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACGCTCTCCGCCCTTTGCAGCCA
3' ss Score
8.75
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCCTCCATGGTGCACACCACCGAGACCGTCCGCATCCGCTACTTCATGGACCTGCTGATGGAGAAGCAGCGGCCGGTGATGCTGGTGGGGAATGCGGGCACGGGGAAAACTGTGCTGATGTGGGACAAGCTCGAAGCTCTCAACACAGAGGAGTACCTGGTGCAGTCTGTGCCTTTTAACTTCTACACCACCTCTGCCATGCTGCAGG
Seq A exon
CCATTCTGGAGAAGCCTCTAGAAAAGAAGTCGGGGAGGAACTATGGCCCACCAGGCACTAAGAGGCTCATTTACTTCATTGATGACTTGAACATGCCCGAGGTGGACAAGTATGGCACTGTGGCTCCGCACACACTCATCCGGCAGCACATGGACCATGGGCACTG
Seq C2 exon
GTACGACAGGAACAAACTGACCCTGAAGGACATCCACAACTGTCAGTACGTGTCCTGCATGAACCCAACCGCGGGGTCCTTCACCATTGACTCCAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'52-57,'52-56,53-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
PF127752=AAA_7=FE(20.2=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCGCTACTTCATGGACC
R:
GGGTTCATGCAGGACACGTAC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]