RnoEX6050803 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107080062-107083244:-
Coord C1 exon
chr10:107083037-107083244
Coord A exon
chr10:107082698-107082863
Coord C2 exon
chr10:107080062-107080164
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAATATTCTGTCCTTCTCAGGGG
3' ss Score
9.1
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCCTCTCTAGTCCACACCACGGAAACCATCCGCATCCGATACTTCATGGACCTGCTCATGGCGAAGGCGTGGCCCGTGATGCTGGTGGGCAATGCGGGCACTGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAGAACCTCAGTACCGACGATTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq A exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTATGGCCCGCCAGGCACTAAGAAGCTAATCTACTTTATCGATGACATGAACATGCCAGAAGTGGACAAGTACGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGACACTG
Seq C2 exon
GTATGACAGGCAGAAACTGACACTGAAGGACGTGCACAACTGTCAGTACGTGGCCTGCATGAACCCTACTTCTGGCTCCTTCACCATTGACCCCAGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'53-58,'53-56,54-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
PF127752=AAA_7=FE(20.2=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCACACCACGGAAACCA
R:
GACAGTTGTGCACGTCCTTCA
Band lengths:
245-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]