BtaEX6090377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54367669-54369347:+
Coord C1 exon
chr19:54367669-54367876
Coord A exon
chr19:54368297-54368462
Coord C2 exon
chr19:54369245-54369347
Length
166 bp
Sequences
Splice sites
3' ss Seq
TACCCCATTCCCTTCTCTAGGGA
3' ss Score
8.92
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCTCACTGGTGCACACCACAGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCGTGGCCAGTCATGCTGGTGGGGAACGCGGGGACAGGCAAGTCGGTGCTAATGGGGGACAAGCTGGACAGCCTGAGCACAGACGACTACCTGGTGCAGGCCGTGCCCTTCAACTTCTACACGACCTCGGCCATGCTGCAGG
Seq A exon
GGATTCTCGAAAAGCCGCTGGAGAAGAAATCAGGGCGGAACTACGGACCGCCAGGCACCAAGAAGCTGATCTACTTCATCGACGACATGAACATGCCCGAGGTGGACAAGTATGGGACGGTGGCCCCCCACACCCTCATCCGACAGCACATGGACCACGGGCACTG
Seq C2 exon
GTATGACCGACAGAAGCTGACGCTGAAGGACGTCCACAACTGTCAGTACGTGGCGTGCATGAACCCCACGTCCGGGTCCTTCACCATCGACCCCAGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'46-48,'46-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.2=100)
A:
PF127752=AAA_7=FE(20.1=100)
C2:
PF127752=AAA_7=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGTCGTGGCCAGTCATG
R:
AAGTCTGGGGTCGATGGTGAA
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]