HsaEX6021138 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11769122-11783748:+
Coord C1 exon
chr17:11769122-11769329
Coord A exon
chr17:11781009-11781174
Coord C2 exon
chr17:11783646-11783748
Length
166 bp
Sequences
Splice sites
3' ss Seq
CCGACTGGCTCTCTCCCCAGCTG
3' ss Score
8.98
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCGTGTTTGGTGCACACGAGTGAGACCATCCGTGTGTGCTACTTCATGGAGCGGTTGATGGCGCGGCAGCGGCCTGTCATGCTGGTGGGCACGGCTGGCACTGGCAAGTCGGTGCTGGTGGGAGCTAAGCTGGCCAGCCTTGACCCCGAGGCATACCTGGTGAAAAACGTGCCATTCAACTACTACACCACGTCAGCAATGCTGCAGG
Seq A exon
CTGTCCTGGAGAAGCCTCTGGAAAAGAAGGCTGGCAGAAACTATGGCCCTCCAGGGAACAAGAAACTCATCTATTTCATTGATGACATGAACATGCCTGAGGTGGATGCCTACGGGACGGTGCAGCCCCACACCATCATCCGGCAGCATCTGGACTATGGCCACTG
Seq C2 exon
GTATGATCGGAGCAAGCTGTCCCTAAAGGAGATCACAAATGTACAGTATGTTTCCTGTATGAACCCCACGGCAGGCAGCTTCACCATCAACCCCCGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'69-65,'69-64,75-65
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
PF127752=AAA_7=FE(20.2=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCATCCGTGTGTGCTACT
R:
CCGTGGGGTTCATACAGGAAA
Band lengths:
257-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains