MmuEX6083787 @ mm10
Exon Skipping
Gene
ENSMUSG00000020473 | Aebp1
Description
AE binding protein 1 [Source:MGI Symbol;Acc:MGI:1197012]
Coordinates
chr11:5865017-5865453:+
Coord C1 exon
chr11:5865017-5865088
Coord A exon
chr11:5865200-5865310
Coord C2 exon
chr11:5865385-5865453
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGAATCTGCCTCCCCCATAGTTG
3' ss Score
5.65
5' ss Seq
TCGGTAGGG
5' ss Score
6.76
Exon sequences
Seq C1 exon
AGCCAGAGGAGGAGACTGAGATGCCCACACTGGACTACAATGACCAGATAGAGAAGGAGGATTACGAGGATT
Seq A exon
TTGAGTACATCCGTCGCCAGAAGCAGCCCAGGCCAACACCCAGCAGGAGGAGGCTCTGGCCAGAGCGCCCTGAGGAGAAGACTGAAGAGCCAGAGGAAAGGAAGGAAGTCG
Seq C2 exon
AGCCACCTCTGAAGCCCCTGCTGCCTCCGGACTATGGGGATAGCTACGTGATCCCCAACTATGATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020473-'1-19,'1-12,9-19=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGGAGGAGACTGAGA
R:
GTCATCATAGTTGGGGATCACGT
Band lengths:
140-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types