RnoEX6043179 @ rn6
Exon Skipping
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86104344-86104775:+
Coord C1 exon
chr14:86104344-86104415
Coord A exon
chr14:86104522-86104632
Coord C2 exon
chr14:86104707-86104775
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGAACCTGCCTCTCTCTTAGTTG
3' ss Score
5.21
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
AGCCAGAGGAGGAGACCGAGATGCCCACACTGGACTACAATGACCAGATAGAGCGGGAAGATTATGAAGACT
Seq A exon
TTGAGTACATCAGGCGCCAGAAGCAGCCCAGACCCACACCCAGCAGGAAGAGGATCTGGCCAGAGCCCCCTGAGGAGAAGACCCAAGAGCCGGAGGAAAGGAAGGAAGTTG
Seq C2 exon
ATCCGCCTCTGAAGCCCCTGTTGCCCCCTGACTATGGGGATGGCTACTTGATCCCCAACTACGATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGAGGAGACCGAGATG
R:
AGTCATCGTAGTTGGGGATCA
Band lengths:
139-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]