MmuEX6086215 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65853766-65866607:-
Coord C1 exon
chr11:65866503-65866607
Coord A exon
chr11:65858128-65858285
Coord C2 exon
chr11:65853766-65853904
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTGATCCTCCACCAGGTA
3' ss Score
9.27
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TCCTGTGGCAACATCTACAAAGGCCTGGCTCAGACTGGTGCCTGGGGCTGTTTTGATGAGTTTAACCGAATCTCTGTGGAGGTCTTGTCGGTGGTGGCTGTCCAG
Seq A exon
GTAAAAAGCATCCAGGATGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGAGAGGAGATTAGCCTTGACCCTTCAGTGGGCATCTTCATTACCATGAACCCAGGCTATGCTGGCCGCACAGAACTGCCAGAGAACCTCAAGGCCCTTTTCAG
Seq C2 exon
GCCCTGTGCAATGGTAGTTCCAGACTTTGAGCTGATCTCTGAGATTATGCTGGTAGCAGAAGGATTCATTGAAGCCCGGTTGTTGGCCAGGAAGTTCATTACCCTTTACCGGCTGTGTAAAGAACTTCTCTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'31-31,'31-30,32-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(14.7=100)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACATCTACAAAGGCCT
R:
TGGAGAGAAGTTCTTTACACAGCC
Band lengths:
234-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: