DreEX6020672 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10418622-10421858:-
Coord C1 exon
chr6:10421713-10421858
Coord A exon
chr6:10418848-10418964
Coord C2 exon
chr6:10418622-10418760
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTATCATTTATCAGGTT
3' ss Score
8.74
5' ss Seq
CAGGTGTTT
5' ss Score
2.28
Exon sequences
Seq C1 exon
TCCATAGGTAATATCTATAAAGGTTTAGCCCAGACCGGAGTGTGGGGCTGTTTTGATGAGTTTAACAGGATCTCTGTGGAGGTTTTGTCTGTGGTTGCTGTGCAGGTGAAAACCATTCAAGATGCTGTTCGCAACAAGAAACAGAG
Seq A exon
GTTCCACTTTCTGGGGGAAGATATTGAGTTGAGGTCAACAGTTGGTATCTTCATCACTTTGAACCCTGGATATGCAGGAAGGACTGAACTCCCAGAGAACCTCAAAGCACTTTTCAG
Seq C2 exon
GCCATGTGCAATGGTGATTCCAGATTATGAGTTAATCTGTGAAATCTTGTTGGTGGCGGAAGGTTTTCTCGATGCACGGCTGCTTGCACGCAAGTTCATCAGCCTGTATACACTATGCAAAGAGCTGCTGTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(20.8=100)
A:
PF127742=AAA_6=FE(16.9=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGTGGGGCTGTTTTGAT
R:
TTTGGACAGCAGCTCTTTGCA
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]