MmuEX7007654 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118050628-118059885:-
Coord C1 exon
chr12:118059740-118059885
Coord A exon
chr12:118057093-118057209
Coord C2 exon
chr12:118050628-118050766
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAACGTTCTCTTTATGGTAGATT
3' ss Score
6.84
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TCCATAGGAAACATCTATAAAGGACTGGTGCAGACGGGAGCATGGGGCTGCTTTGATGAGTTCAACCGCATCGCTGTGGAGGTTCTGTCTGTAGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAACGGGAGAAAGAG
Seq A exon
ATTTGTATTTCTTGGAGAGACTATCCCGCTGAAACCCTCGGTTGGAATATTTATTACTCTGAACCCAGGATATGCCGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
Seq C2 exon
ACCCTGTGCCATGGTGGCCCCGGACACTGAGCTGATCTGTGAAATCATGTTGGTGGCGGAAGGGTTTGTGGATGCACGCTCGTTGGCCCGGAAGTTCATTTCCTTGTACACGCTCTGTGAGGAGCTGCTGTCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'42-44,'42-42,43-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(20.8=100)
A:
PF127742=AAA_6=FE(16.9=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGGACTGGTGCAGACGG
R:
CCTCACAGAGCGTGTACAAGG
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types