MmuEX6083424 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118057093-118060303:-
Coord C1 exon
chr12:118060294-118060303
Coord A exon
chr12:118059740-118059885
Coord C2 exon
chr12:118057093-118057209
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACTCTACCACCTCCTTGTAGTCC
3' ss Score
6.79
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GGACTACAGG
Seq A exon
TCCATAGGAAACATCTATAAAGGACTGGTGCAGACGGGAGCATGGGGCTGCTTTGATGAGTTCAACCGCATCGCTGTGGAGGTTCTGTCTGTAGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAACGGGAGAAAGAG
Seq C2 exon
ATTTGTATTTCTTGGAGAGACTATCCCGCTGAAACCCTCGGTTGGAATATTTATTACTCTGAACCCAGGATATGCCGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'41-42,'41-41,42-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(20.8=100)
C2:
PF127742=AAA_6=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types