MmuEX6083424 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119295566-119298923:-
Coord C1 exon
chr12:119298767-119298923
Coord A exon
chr12:119298213-119298358
Coord C2 exon
chr12:119295566-119295682
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACTCTACCACCTCCTTGTAGTCC
3' ss Score
6.79
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCGGCTGGCCCAGCTGGAACAGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCCTGGGCATGATGGTTTACGTATTCAACTGCTCAGAGCAAATGGACTACAGG
Seq A exon
TCCATAGGAAACATCTATAAAGGACTGGTGCAGACGGGAGCATGGGGCTGCTTTGATGAGTTCAACCGCATCGCTGTGGAGGTTCTGTCTGTAGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAACGGGAGAAAGAG
Seq C2 exon
ATTTGTATTTCTTGGAGAGACTATCCCGCTGAAACCCTCGGTTGGAATATTTATTACTCTGAACCCAGGATATGCCGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(20.8=100)
C2:
PF127742=AAA_6=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCTGACCATGAGCGGC
R:
ACAGAGCTTTGAGGTTTTCTGGT
Band lengths:
245-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: