GgaEX6015778 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1069620-1073393:+
Coord C1 exon
chr18:1069620-1069776
Coord A exon
chr18:1070571-1070675
Coord C2 exon
chr18:1073236-1073393
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTGTATCTTTCAGTCT
3' ss Score
9.68
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
Seq A exon
TCTTGTGGGAATATTTACAAAGGCCTTTCCCAGACGGGAGCCTGGGGCTGTTTTGATGAGTTTAACAGGATCTCAGTTGAGGTCCTTTCTGTGGTGGCTGTACAG
Seq C2 exon
GTGAAGAGTGTGCAGGATGCAATAAGGGAGAAGAAGAAATCCTTCAATTTTCTTGGAGAAGACATCAGCTTGGTACCTTCGGTGGGAATTTTCATCACCATGAACCCCGGTTACGCAGGGCGAACTGAGCTACCTGAGAATTTAAAAGCTCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCATCTGACCATGAGCG
R:
ACCGGGGTTCATGGTGATGAA
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]