HsaEX6021149 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11719334-11739037:+
Coord C1 exon
chr17:11719334-11719490
Coord A exon
chr17:11727818-11727922
Coord C2 exon
chr17:11738880-11739037
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGCATTTTCTTGCAGTCT
3' ss Score
9.31
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGCTACATCACCCTCACCCAGTCCCTGCACCTGACCATGAGTGGGGCTCCCGCAGGACCTGCAGGCACAGGCAAGACCGAGACCACCAAGGACCTGGGCCGCGCACTGGGCATCCTGGTCTATGTGTTCAACTGCTCGGAGCAGATGGATTACAAG
Seq A exon
TCTTGTGGCAACATCTACAAAGGCCTTGCTCAGACTGGTGCCTGGGGCTGCTTTGATGAGTTTAATCGAATCTCCGTGGAGGTCTTGTCAGTGGTGGCAGTGCAG
Seq C2 exon
GTAAAAAGCATTCAAGATGCGATTAGAGATAAGAAGCAGTGGTTCAGCTTCCTTGGGGAGGAGATCAGCCTGAATCCTTCTGTCGGTATCTTCATCACCATGAACCCAGGCTATGCTGGCCGCACAGAGCTGCCAGAGAATCTCAAGTCTCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'54-50,'54-48,56-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACATCACCCTCACCCAG
R:
ACCGACAGAAGGATTCAGGCT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains