MmuEX0015110 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65858128-65874627:-
Coord C1 exon
chr11:65874471-65874627
Coord A exon
chr11:65866503-65866607
Coord C2 exon
chr11:65858128-65858285
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTGTTTCCTTGCAGTCC
3' ss Score
11.52
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGCTACATCACTCTCACCCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCAGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCAGAGCACTCGGCATCATGGTCTATGTGTTTAACTGTTCTGAGCAGATGGACTACAAG
Seq A exon
TCCTGTGGCAACATCTACAAAGGCCTGGCTCAGACTGGTGCCTGGGGCTGTTTTGATGAGTTTAACCGAATCTCTGTGGAGGTCTTGTCGGTGGTGGCTGTCCAG
Seq C2 exon
GTAAAAAGCATCCAGGATGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGAGAGGAGATTAGCCTTGACCCTTCAGTGGGCATCTTCATTACCATGAACCCAGGCTATGCTGGCCGCACAGAACTGCCAGAGAACCTCAAGGCCCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCAAGACAGAGACCAC
R:
AAGGGCCTTGAGGTTCTCTGG
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: