DreEX6020671 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10418848-10422099:-
Coord C1 exon
chr6:10421943-10422099
Coord A exon
chr6:10421713-10421858
Coord C2 exon
chr6:10418848-10418964
Length
146 bp
Sequences
Splice sites
3' ss Seq
TATCTTCCTGCTCCTTTCAGTCC
3' ss Score
9.53
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATGTTACATTACTCTGACTCAGTCTTTGCACCTTACCATGAGTGGCGCCACCTCTGGTCCTGCTGGAACTGGCAAGACGGAAACCACAAAAGACCTTGGCCGCTCGCTTGGCATTATGGTCTATGTGTTCAACTGCTCAGAGCAAATGGACTACAAG
Seq A exon
TCCATAGGTAATATCTATAAAGGTTTAGCCCAGACCGGAGTGTGGGGCTGTTTTGATGAGTTTAACAGGATCTCTGTGGAGGTTTTGTCTGTGGTTGCTGTGCAGGTGAAAACCATTCAAGATGCTGTTCGCAACAAGAAACAGAG
Seq C2 exon
GTTCCACTTTCTGGGGGAAGATATTGAGTTGAGGTCAACAGTTGGTATCTTCATCACTTTGAACCCTGGATATGCAGGAAGGACTGAACTCCCAGAGAACCTCAAAGCACTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(20.8=100)
C2:
PF127742=AAA_6=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGACTCAGTCTTTGCACC
R:
GTGCTTTGAGGTTCTCTGGGA
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]