BtaEX6026620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30557587-30563138:+
Coord C1 exon
chr4:30557587-30557743
Coord A exon
chr4:30557860-30558005
Coord C2 exon
chr4:30563022-30563138
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGCCTCACTCCATTGTTTAGTCC
3' ss Score
4.58
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTTACATTACTTTGACTCAGTCCCTTCATCTCACCATGAGTGGGGCTCCAGCTGGCCCGGCTGGAACAGGAAAAACAGAAACCACCAAAGACCTTGGCCGTGCCCTTGGCATGATGGTTTATGTATTCAACTGTTCAGAGCAAATGGACTACAAG
Seq A exon
TCCATAGGAAGTATCTATAAGGGACTGGTGCAGACAGGAGCCTGGGGCTGCTTTGACGAGTTCAATCGAATCTCTGTGGAAGTTCTGTCAGTGGTGTCGGTGCAAGTGAAAATGATACACGATGCCATCAGAAACAGGAAGGAGAG
Seq C2 exon
ATTTGTATTTCTTGGCGAAGCTATCATACTGAAGCCATCAGTCGGAATATTTATCACTATGAACCCAGGATATGCTGGTCGAACTGAATTACCAGAAAATCTCAAAGCTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(20.8=100)
C2:
PF127742=AAA_6=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGACTCAGTCCCTTCATCT
R:
CTGGTAATTCAGTTCGACCAGCA
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]