HsaEX6007406 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21726717-21730499:+
Coord C1 exon
chr7:21726717-21726873
Coord A exon
chr7:21727000-21727145
Coord C2 exon
chr7:21730383-21730499
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGCCTCACTTTATCATTTAGTCC
3' ss Score
6.37
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTTATATTACCTTAACTCAATCACTTCATCTAACCATGAGTGGGGCTCCTGCTGGCCCAGCTGGTACCGGGAAAACAGAGACCACCAAAGACCTAGGACGTGCCCTTGGCATGATGGTCTATGTATTCAACTGTTCAGAGCAAATGGACTACAAA
Seq A exon
TCCATAGGCAATATCTATAAGGGATTGGTGCAGACAGGAGCTTGGGGCTGCTTTGATGAGTTCAACCGAATCTCTGTGGAAGTTCTGTCAGTGGTGGCAGTACAAGTGAAAATGATTCATGATGCCATCAGAAACAGGAAGAAGAG
Seq C2 exon
ATTTGTATTTCTTGGGGAAGCTATCACACTGAAGCCATCAGTTGGAATATTTATTACTATGAACCCGGGTTATGCTGGTCGAACCGAATTACCGGAAAATCTCAAAGCTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(20.8=100)
C2:
PF127742=AAA_6=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTAACTCAATCACTTCATCTAAC
R:
CCGGTAATTCGGTTCGACCAG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)