RnoEX6030075 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145968064-145971446:-
Coord C1 exon
chr6:145971290-145971446
Coord A exon
chr6:145970732-145970877
Coord C2 exon
chr6:145968064-145968180
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACCGTGATACCTCCTTGTAGTCC
3' ss Score
6.57
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCAGCTGGCCCAGCTGGAACGGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCTTGGGCATGATGGTTTACGTATTCAACTGCTCAGAACAAATGGACTACAGG
Seq A exon
TCCATAGGCAACATCTATAAAGGACTGGTGCAGACAGGAGCGTGGGGCTGCTTTGATGAGTTCAACCGCATTGCTGTGGAGGTTCTGTCCGTGGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAGCAGGAGAAGGAG
Seq C2 exon
ATTCGTATTTCTTGGGGAGACCATCCCGCTGAAGCCATCGGTTGGAATATTCATCACTCTGAACCCAGGATATGCTGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'46-47,'46-46,47-47=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(20.8=100)
C2:
PF127742=AAA_6=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCTGACCATGAGCGGC
R:
ACAGAGCTTTGAGGTTTTCTGGT
Band lengths:
245-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]