RnoEX0028660 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52564896-52580845:-
Coord C1 exon
chr10:52580689-52580845
Coord A exon
chr10:52572986-52573090
Coord C2 exon
chr10:52564896-52565053
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTATATGTTTCCTTGCAGTCC
3' ss Score
10.23
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGCTACATCACTCTCACTCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCCGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCCGAGCACTGGGCATCATGGTCTATGTGTTTAACTGTTCCGAGCAGATGGACTACAAG
Seq A exon
TCCTGTGGCAACATCTACAAAGGCCTGGCTCAGACTGGTGCCTGGGGCTGTTTTGATGAATTTAACCGAATCTCTGTGGAGGTCTTGTCAGTGGTGGCTGTGCAG
Seq C2 exon
GTGAAAAGCATCCAGGACGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGGGAGGAGATTAGCCTTGACCCTTCTGTGGGCATCTTCATCACTATGAACCCGGGCTATGCTGGCCGCACAGAACTGCCAGAAAACCTCAAGGCCCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCAAGACAGAGACCAC
R:
GAGGGCCTTGAGGTTTTCTGG
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]