BtaEX0011559 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30557860-30569581:+
Coord C1 exon
chr4:30557860-30558005
Coord A exon
chr4:30563022-30563138
Coord C2 exon
chr4:30569443-30569581
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAGCATTCTTCTTCTGGTAGATT
3' ss Score
5.5
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TCCATAGGAAGTATCTATAAGGGACTGGTGCAGACAGGAGCCTGGGGCTGCTTTGACGAGTTCAATCGAATCTCTGTGGAAGTTCTGTCAGTGGTGTCGGTGCAAGTGAAAATGATACACGATGCCATCAGAAACAGGAAGGAGAG
Seq A exon
ATTTGTATTTCTTGGCGAAGCTATCATACTGAAGCCATCAGTCGGAATATTTATCACTATGAACCCAGGATATGCTGGTCGAACTGAATTACCAGAAAATCTCAAAGCTCTTTTCAG
Seq C2 exon
ACCCTGTGCCATGGTGGCCCCAGACATCGAGCTAATCTGTGAAATCCTGTTAGTTGCTGAGGGTTTTGTGGATGCACGCTCATTAGCCTGCAAATTTATCACATTGTACACACTCTGCCAGGAGCTCCTGTCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'45-46,'45-44,46-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(20.8=100)
A:
PF127742=AAA_6=FE(16.9=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGGACTGGTGCAGACAGG
R:
GAGCTCCTGGCAGAGTGTGTA
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development