GgaEX1020169 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10081712-10082549:+
Coord C1 exon
chr18:10081712-10081816
Coord A exon
chr18:10081924-10082081
Coord C2 exon
chr18:10082411-10082549
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTGCTCCCTGTCCAGGTG
3' ss Score
10.84
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TCCTGCGGCAATATCTATAAGGGGCTCGCTCAGACCGGAGCCTGGGGCTGCTTCGACGAGTTCAATCGCATCGCGGTGGAGGTGCTGTCAGTGATTGCAGTGCAG
Seq A exon
GTGAAATGTGTTCAGGATGCAATTCGTGCTAAAAAGAAAACGTTCAATTTTCTCGGAGAGACGATATCGCTGGTGCCATCGGTCGGGCTGTTCATCACGATGAACCCTGGCTATGCAGGACGGACAGAACTGCCCGAAAACTTAAAGGCTCTGTTCAG
Seq C2 exon
ACCCTGTGCCATGGTGGTTCCGGACTTTGAGCTCATCTGTGAGATCATGCTCGTTGCAGAAGGCTTTATTGATGCCAAGCTCCTAGCAAGGAAGTTCATTACTTTGTACACACTCTGCAAGGAGCTGCTGTCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'40-41,'40-40,41-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(14.7=100)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGCAATATCTATAAGGGGC
R:
GACAGCAGCTCCTTGCAGAG
Band lengths:
234-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]