RnoEX6050794 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107091622-107095755:-
Coord C1 exon
chr10:107095651-107095755
Coord A exon
chr10:107092145-107092302
Coord C2 exon
chr10:107091622-107091760
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTGCGCACTCGCTGTCTAGGTA
3' ss Score
9.07
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
TCCTGTGGAAACATCTACAAGGGTCTGGCACAGACAGGAGCCTGGGGTTGCTTTGATGAGTTTAACCGGATCTCAGTGGAGGTCTTGTCTGTGATTGCTGTACAG
Seq A exon
GTAAAGTGTGTCCAAGATGCAATTCGGGCCAAGAAAAAGAAGTTTAACTTCCTGGGAGAAATGATAAGTCTCATCCCCACTGTGGGCATCTTCATCACCATGAACCCTGGCTACGCGGGACGCACGGAACTGCCGGAGAACTTGAAGGCTCTATTCAG
Seq C2 exon
GCCCTGCGCTATGGTGGTCCCCGACTTTGAGCTGATCTGTGAGATTATGCTGGTGGCTGAGGGCTTCCTGGAAGCTCGCCTCCTGGCCCGGAAGTTCATCACCCTCTACACCCTGTGCAAAGAGCTGCTCTCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(14.7=100)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGAAACATCTACAAGGGT
R:
TGAGAGCAGCTCTTTGCACAG
Band lengths:
237-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]