HsaEX6025144 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76491041-76495194:-
Coord C1 exon
chr17:76495090-76495194
Coord A exon
chr17:76491957-76492114
Coord C2 exon
chr17:76491041-76491179
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCACCAACCGTGCAGGTA
3' ss Score
6.47
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCCTGTGGAAATATCTACAAGGGCCTGGCCCAGACGGGAGCCTGGGGCTGCTTTGACGAGTTTAATCGCATCTCAGTGGAAGTCTTGTCTGTGATTGCCGTGCAG
Seq A exon
GTAAAATGTGTCCAGGATGCAATTCGGGCCAAGAAAAAAGCATTCAATTTCCTGGGAGAGATCATAGGCCTCATTCCCACCGTCGGTATCTTCATCACCATGAACCCTGGGTACGCCGGACGCGCGGAGCTGCCTGAGAACCTAAAAGCCTTATTCAG
Seq C2 exon
GCCCTGTGCCATGGTCGTCCCCGACTTCGAACTGATATGTGAGATCATGCTCATGGCCGAGGGCTTTCTGGAAGCCCGCCTTCTGGCCAGGAAGTTCATCACCCTGTACACCTTGTGCAAGGAGCTGCTCTCGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'41-43,'41-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(14.7=100)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATATCTACAAGGGCCTGGC
R:
CTTCGAGAGCAGCTCCTTGC
Band lengths:
235-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)