RnoEX6030076 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145962010-145970877:-
Coord C1 exon
chr6:145970732-145970877
Coord A exon
chr6:145968064-145968180
Coord C2 exon
chr6:145962010-145962148
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAACGTTCTCTTTATGGTAGATT
3' ss Score
6.84
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TCCATAGGCAACATCTATAAAGGACTGGTGCAGACAGGAGCGTGGGGCTGCTTTGATGAGTTCAACCGCATTGCTGTGGAGGTTCTGTCCGTGGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAGCAGGAGAAGGAG
Seq A exon
ATTCGTATTTCTTGGGGAGACCATCCCGCTGAAGCCATCGGTTGGAATATTCATCACTCTGAACCCAGGATATGCTGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
Seq C2 exon
ACCCTGTGCCATGGTGGCCCCTGATACTGAGCTGATCTGTGAAATCATGTTGGTGGCAGAAGGGTTTGTGGATGCGCGGTCATTGGCCCGGAAGTTCATTTCCTTGTACACGCTCTGTGACGAACTGCTGTCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(20.8=100)
A:
PF127742=AAA_6=FE(16.9=100)
C2:
PF127742=AAA_6=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGACTGGTGCAGACAGGA
R:
CGTCACAGAGCGTGTACAAGG
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]