MmuEX6090406 @ mm9
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104993755-104999098:+
Coord C1 exon
chr11:104993755-104993894
Coord A exon
chr11:104996652-104996758
Coord C2 exon
chr11:104999033-104999098
Length
107 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTGCTGCCCTCCAGGAT
3' ss Score
8.57
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACAAATTCACAATATGATCCTTCTCGCTGTTATGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAGTGCCTGAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCAGCAATTGTTCCAGACAA
Seq A exon
GATGCAGAAAGCGATCAGCAAGCTAAGCCGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAACTTCGGTTTAAGAAAG
Seq C2 exon
GTCAGTGTCTATCTGGAAACTTCTATGTGAGAGGTGATGGCACCAGAGTTTACTTCTTCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-'9-14,'9-10,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.6=100),PF110413=DUF2612=PU(65.1=87.2)
A:
PF134891=Methyltransf_23=FE(19.3=100),PF110413=DUF2612=PD(33.3=56.8)
C2:
PF134891=Methyltransf_23=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTCACAATATGATCCTTCTCGC
R:
GTGTGAAGAAGTAAACTCTGGTGC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: