DreEX6016083 @ danRer10
Exon Skipping
Gene
ENSDARG00000008105 | mettl2a
Description
methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
Coordinates
chr3:19527152-19532498:+
Coord C1 exon
chr3:19527152-19527291
Coord A exon
chr3:19528555-19528661
Coord C2 exon
chr3:19532433-19532498
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTTAATCCATGTTTTCCAGGAT
3' ss Score
7.51
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAA
Seq A exon
GATGCAAAAGTCTATCAATAGATTGGGACGATTGCTGAAACCCGGAGGAGTGTTGTTATTGAGAGACTATGGCCGATATGACATGGCACAGCTACGTTTCAAAAAAG
Seq C2 exon
GGAGGTGCTTGTCTGAAAACTTCTATGTTCGAGGTGATGGAACCCGCGTCTACTTTTTCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008105-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(44.2=100),PF118993=DUF3419=PU(37.5=70.2)
A:
PF082427=Methyltransf_12=PD(17.3=48.6),PF118993=DUF3419=FE(40.9=100)
C2:
PF134891=Methyltransf_23=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCTGAGTATGACCCATCACG
R:
TGTGTGAAAAAGTAGACGCGGG
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]