RnoEX0054024 @ rn6
Exon Skipping
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93360361-93364927:+
Coord C1 exon
chr10:93360361-93360500
Coord A exon
chr10:93360969-93361075
Coord C2 exon
chr10:93364862-93364927
Length
107 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTGCTGCACTGCAGGAT
3' ss Score
7.04
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACAAATTCAGAATATGATCCTTCCCGCTGTTTTGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAATGCCCAAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCCGCAATTGTTCCAGACAA
Seq A exon
GATGCAGAAAGCTATCAGCAAGCTAAGCAGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
Seq C2 exon
GTCAGTGTCTGTCTGGAAATTTCTATGTGAGAGGTGATGGCACCAGAGTTTACTTCTTCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.5=100)
A:
PF134891=Methyltransf_23=FE(19.1=100)
C2:
PF134891=Methyltransf_23=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTCAGAATATGATCCTTCCCGC
R:
GTGTGAAGAAGTAAACTCTGGTGC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]