MmuEX6090940 @ mm10
Exon Skipping
Gene
ENSMUSG00000051497 | Kcnj16
Description
potassium inwardly-rectifying channel, subfamily J, member 16 [Source:MGI Symbol;Acc:MGI:1314842]
Coordinates
chr11:110968033-111027968:+
Coord C1 exon
chr11:110968033-110968095
Coord A exon
chr11:110986430-110986510
Coord C2 exon
chr11:111024409-111027968
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACTGTTTATTCTCTCACAGGCC
3' ss Score
10.03
5' ss Seq
AAGGTCAAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
ATTCATAACCCTTGCAAGCTGAGAGCAAGCAGCTCCTACCTCCCTGTGGAAGAGTGAATGAAG
Seq A exon
GCCTTCGATGATGGGGAAAATAGATCATCCTTGTTGCTTGTTGGCTCACTGGAACTGGACACAAATACTTAAGAAATTAAG
Seq C2 exon
GCTTTAACAGAAAATCTTTAAAAAAAAAAAAGTAGAAGTTAGAATACACCTGGAACTTTTAACTGACATCGGACTCCTCTGAATGCCCTAAAGGACCAAGAAAGAATGAGCTATTACGGAAGTAGCTACAGGATCGTCAATGTGGACTCCAAATATCCAGGCTATCCTCCAGAGCATGCCATCGCTGAGAAGAGAAGAGCAAGAAGGCGCTTGCTCCACAAAGATGGCAGCTGTAATGTGTACTTTAAACACATTTTTGGAGAATGGGGGAGCTACATGGTTGATATTTTTACCACTCTTGTGGATACCAAGTGGCGCCATATGTTCGTAATATTTTCTCTGTCTTACATTCTCTCCTGGTTGATATTTGGCTCCATATTTTGGCTCATAGCCTTTCATCACGGAGACCTATTAAGCGATCCAGATATCACCCCTTGTGTTGACAACGTGCATTCATTTACGGCTGCATTTTTATTCTCCCTGGAGACCCAGACCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051497_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=79.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTACCTCCCTGTGGAAG
R:
TGGAGTCCACATTGACGATCCT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types