MmuEX6090940 @ mm9
Exon Skipping
Gene
ENSMUSG00000051497 | Kcnj16
Description
potassium inwardly-rectifying channel, subfamily J, member 16 [Source:MGI Symbol;Acc:MGI:1314842]
Coordinates
chr11:110829347-110889282:+
Coord C1 exon
chr11:110829347-110829409
Coord A exon
chr11:110847744-110847824
Coord C2 exon
chr11:110885723-110889282
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACTGTTTATTCTCTCACAGGCC
3' ss Score
10.03
5' ss Seq
AAGGTCAAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
ATTCATAACCCTTGCAAGCTGAGAGCAAGCAGCTCCTACCTCCCTGTGGAAGAGTGAATGAAG
Seq A exon
GCCTTCGATGATGGGGAAAATAGATCATCCTTGTTGCTTGTTGGCTCACTGGAACTGGACACAAATACTTAAGAAATTAAG
Seq C2 exon
GCTTTAACAGAAAATCTTTAAAAAAAAAAAAGTAGAAGTTAGAATACACCTGGAACTTTTAACTGACATCGGACTCCTCTGAATGCCCTAAAGGACCAAGAAAGAATGAGCTATTACGGAAGTAGCTACAGGATCGTCAATGTGGACTCCAAATATCCAGGCTATCCTCCAGAGCATGCCATCGCTGAGAAGAGAAGAGCAAGAAGGCGCTTGCTCCACAAAGATGGCAGCTGTAATGTGTACTTTAAACACATTTTTGGAGAATGGGGGAGCTACATGGTTGATATTTTTACCACTCTTGTGGATACCAAGTGGCGCCATATGTTCGTAATATTTTCTCTGTCTTACATTCTCTCCTGGTTGATATTTGGCTCCATATTTTGGCTCATAGCCTTTCATCACGGAGACCTATTAAGCGATCCAGATATCACCCCTTGTGTTGACAACGTGCATTCATTTACGGCTGCATTTTTATTCTCCCTGGAGACCCAGACCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051497-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF150621=ARL6IP6=WD(100=75.8),PF0100715=IRK=WD(100=45.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTACCTCCCTGTGGAAG
R:
TGGAGTCCACATTGACGATCCT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: