MmuEX6094419 @ mm9
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:95728590-95735570:-
Coord C1 exon
chr4:95735421-95735570
Coord A exon
chr4:95734875-95735038
Coord C2 exon
chr4:95728590-95728766
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTATTCACATCCAGGAC
3' ss Score
9.39
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAACAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGCATCGAATTCAGGAGGAGGCCTCCCACCTGGTGGAGGCTATAGGGGAAGAGGAAG
Seq A exon
GACAGCCTTTTGATCCTCACTTCAAGATCTACAGTGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGGGAACGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGCAGTTACTGGATAAAGCCATGTACTTGGGTACCACCTCCCTAATGGTCCAT
Seq C2 exon
CTCTACAACATCTTCCCATGGATAACAAAACATCTCCCAGGACAACACCAAACATTGTTGGCTACCTGGAGAAAACTGAAATCATATATTGCTGATATAATTGACAATCACCGCAAAGACTGGAACCCTGATGAGCCAAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(28.7=100),PF0006717=p450=PU(8.6=20.0)
C2:
PF0006717=p450=PU(27.6=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGATGACACTGAGGAA
R:
TCTTGGCTCATCAGGGTTCCA
Band lengths:
245-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: