BtaEX0000369 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BFL1]
Coordinates
chr3:86617001-86620093:+
Coord C1 exon
chr3:86617001-86617150
Coord A exon
chr3:86617538-86617698
Coord C2 exon
chr3:86619917-86620093
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTCTCCTGCCTCCAGGAC
3' ss Score
11.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTTGATCATGTCCAGTGGCCAGTTATGGAAGGAACAAAGAAGGTTTGCCCTGACAACTCTTAGGAACTTTGGTTTAGGAAAGAAGAGCTTAGAGGAACGCATTCAGGAGGAGGCCTCCTACCTCATCCAGACGATAAGAGAGGAGAACG
Seq A exon
GACAGCCTTTTGACCCTCACTTGACAATCAACAATGCCGTTTCCAATATTATTTGCTCCATCACCTTCGGGGAGCGCTTTGACTACCAGGATGATCAGTTCCAGGAACTGCTGAGGATGCTGGATGAGATATTAAATCTGCAGACGTCAATGTGCTGCCAG
Seq C2 exon
CTCTACAATGTTTTTCCAAGGATAATGAATTTCCTTCCGGGTCCGCACCAAGCACTCTTTAGTAATATGGAGAAAATGAAGATGTTTGTTGCCCGTATGATTGAAAACCACAAGAGAGACTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTATCTCCAGGAAATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010033_MULTIEX1-5/9=4-6
Average complexity
S
Mappability confidence:
76%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTGCCCTGACAACTCTT
R:
GCTTCAGCAGGATTCCAGTCT
Band lengths:
246-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development