RnoEX0025919 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115031506-115036867:-
Coord C1 exon
chr5:115036718-115036867
Coord A exon
chr5:115036180-115036340
Coord C2 exon
chr5:115031506-115031682
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCATTCACATCCAGGAC
3' ss Score
9.15
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACTCTGAGGAACTTTGGATTGGGAAAGAAGAGCTTAGAGCAGCGAATCCAGGAGGAGGCTCACCATCTTGTGGAGGCCATAGGAGAGGAGGAAG
Seq A exon
GACAGCCTTTTGATCCTCACTTCAAGATCAACAATGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGTGAAAGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGAAGTTACTGGATAAGGCCATGTACCTGGGTACTCCCATGATGATCCAC
Seq C2 exon
CTCTACAACATGTTCCCATGGATAATCAAACATCTCCCAGGACAACACCAAACCTTGTTGGCTACCTGGGGAAAACTGAAATCATATATTGCTGATATCATTGAAAATCACCGCGAAGACTGGAACCCTGCTGAGCCGAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-14/18=13-15
Average complexity
C1
Mappability confidence:
87%=80=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(0.2=2.0),PF0006717=p450=FE(94.3=100),PF0006717=p450=PU(3.5=3.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000012503fB3819
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGATGACTCTGAGGAA
R:
ATGAAGTCTCTCGGCTCAGCA
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]