MmuEX6095188 @ mm10
Exon Skipping
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:115111618-115119629:-
Coord C1 exon
chr4:115119439-115119629
Coord A exon
chr4:115112806-115112939
Coord C2 exon
chr4:115111618-115111682
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTTTGTCCTTACAGGGA
3' ss Score
12.44
5' ss Seq
CAGGTCTTC
5' ss Score
0.53
Exon sequences
Seq C1 exon
GCTGAAGATGAACGAGCCTTCTCAGATGCTGACCTTCGGGCTGAGGTGAACACCTTCATGTGGGCAGGACATGATGCCTCTGCAGCTAGCATCTCCTGGCTCCTTTACTGCCTGGCTCTAAATCCCGAGCATCAGGACAGATGCCGGACAGAGATCAGGAGCATCCTGGGAGATGGGTCTTCCATCACCTG
Seq A exon
GGAACAGCTGGATGAGATGTCATACACCACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCTGTCCCATCCATCTCCAGGGAGCTCAGCAAACCCCTTACCCTCCCAGATGGACACTCACTGCCTGCAG
Seq C2 exon
GTATGACTGTGGTTCTTAGTATTTGGGGTCTCCACCACAACCCTGCTGTCTGGAACGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-'7-10,'7-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(4.6=100)
Main Skipping Isoform:
ENSMUST00000051400fB1180
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCTCAGATGCTGACCT
R:
CTTTGGGTCGTTCCAGACAGC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types