RnoEX0026034 @ rn6
Exon Skipping
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133932443-133940451:-
Coord C1 exon
chr5:133940261-133940451
Coord A exon
chr5:133933617-133933750
Coord C2 exon
chr5:133932443-133932507
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTTTGTCCTCACAGGGA
3' ss Score
11.78
5' ss Seq
CAGGTCTTC
5' ss Score
0.53
Exon sequences
Seq C1 exon
GCTGGAGATGAAAAGGCCTTCTCAGATGCTGACCTTCGGTCTGAGGTGAACACCTTCATGTGGGCAGGACACGACGCCTCTGCAGCTAGCATCTCCTGGCTCCTTTACTGCCTGGCTCTGAACCCTGAGCATCAAGACAGATGCCGGACAGAGATCAGGAGCATTCTGGGAGATGGGTCTTCCATCACCTG
Seq A exon
GGAACAGCTGGATGAGATACCTTACACTACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCCATCCCATCCATCTCCAGGGAACTCAGCAAACCCCTTACCCTCCCAGATGGACACTCGCTGCCTGCAG
Seq C2 exon
GAATGACTGTGGTCCTTAGTATTTGGGGTCTCCACCACAATCCTGCTGTCTGGAAAGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513_MULTIEX1-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGATGAAAAGGCCTTCT
R:
TCCAGACAGCAGGATTGTGGT
Band lengths:
245-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]