MmuEX6097657 @ mm9
Exon Skipping
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141396166-141399711:-
Coord C1 exon
chr4:141399586-141399711
Coord A exon
chr4:141397412-141397548
Coord C2 exon
chr4:141396166-141396311
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGTCCACTTTGCATTCTAGGAA
3' ss Score
9.99
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
CACAAACTTGACCTACCGCGTGGGCCTGGGGAAGTATAACCTGACAGTGGAGGATGAGGAAGGCTCCGTGTACGCGGAGGTGGATACCATCTACGTCCATGAGAAGTGGAACCGTCTTCTGCTGTG
Seq A exon
GAACGACATCGCCATCATCAAGTTGGCTGAGCCTGTGGAGCTGAGCGACACCATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTCACTGGCTGGGGTCGCCTCTGGA
Seq C2 exon
CCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTCTGCCTGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.1=100)
A:
PF0008921=Trypsin=FE(19.8=100)
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTGGGGAAGTATAACCT
R:
TACAGGCAGAGATGACACCGT
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: