RnoEX0025268 @ rn6
Exon Skipping
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160397182-160400636:-
Coord C1 exon
chr5:160400511-160400636
Coord A exon
chr5:160398340-160398476
Coord C2 exon
chr5:160397182-160397327
Length
137 bp
Sequences
Splice sites
3' ss Seq
ACCTCCACTATGCGTTCCAGGAA
3' ss Score
6.41
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
CAAAGACTTCACTTACCGTGTGGGCCTGGGGAAGTATAATCTGACAGTGGAGGATGAGGAAGGCTCCGTGTACGCTGAGGTGGACACCATCTACGTCCATGAGAAGTGGAACCGACTCTTCCTGTG
Seq A exon
GAACGACATCGCTATCATTAAGTTGGCTGAGCCTGTGGAACTGAGCAACACCATCCAGGTGGCCTGCATCCCAGAGGAAGGTTCCCTGCTGCCTCAGGACTATCCCTGCTATGTCACGGGCTGGGGTCGCCTCTGGA
Seq C2 exon
CCAATGGTCCCATCGCTGAAGTGCTCCAGCAGGGCCTGCAGCCCATCGTGAGCCATGCCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGAAGACGATGGTGTGCGCTGGGGGTGATGGCGTCATCTCTGCCTGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.0=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGCCTGGGGAAGTATA
R:
GTTACAGGCAGAGATGACGCC
Band lengths:
255-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]