DreEX6049596 @ danRer10
Exon Skipping
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21338018-21338838:-
Coord C1 exon
chr8:21338716-21338838
Coord A exon
chr8:21338498-21338634
Coord C2 exon
chr8:21338018-21338163
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCTGCACCACAGTAA
3' ss Score
6.69
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CAGTAGCAGAACTTACAGAGTGTTTTTGGGAAAACATAGCCTGAGCCAGGAGGAGAACGGCTCTGTCGCTATTGGTGCTGGAAAGATCATTGTCCACGAGGCTTGGAACTCCTTCACAATCCG
Seq A exon
TAATGACATCGCCCTGATCAAACTGGAGACTGCTGTTACCATAGGTGACACCATCACTCCTGCATGTCTTCCCGAGGCTGGCTATGTGCTGCCCCATAATGCTCCCTGCTACGTCACTGGATGGGGACGTCTCTACA
Seq C2 exon
CTAATGGACCCCTGGCCGATATCCTGCAGCAGGCTCTTCTGCCCGTGGTGGATCATGCCACCTGCTCCAAGTCTGACTGGTGGGGCTCTCAGGTCACCACAAGCATGGTGTGCGCTGGTGGAGATGGTGTTGTTGCTGGATGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765-'3-8,'3-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(17.7=100)
A:
PF0008921=Trypsin=FE(19.8=100)
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAACATAGCCTGAGCC
R:
TTACATCCAGCAACAACACCA
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]