MmuEX6097005 @ mm9
Exon Skipping
Gene
ENSMUSG00000023433 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:MGI Symbol;Acc:MGI:1915118]
Coordinates
chr4:136979162-136980835:-
Coord C1 exon
chr4:136980701-136980835
Coord A exon
chr4:136979760-136979896
Coord C2 exon
chr4:136979162-136979304
Length
137 bp
Sequences
Splice sites
3' ss Seq
GGACTCTCCTTTTCCCCCAGCAA
3' ss Score
6.88
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
GACTTCTCGCACCTACCAGGTTGTACTTGGGGAGCATGAACGTGGTGTGGAGGAAGGCCAAGAACAGGTGATCCCCATCAACGCTGGAGACCTCTTTGTGCACCCCAAGTGGAACTCTATGTGTGTGAGCTGTGG
Seq A exon
CAATGACATCGCCCTGGTCAAGCTCTCAAGAAGTGCCCAGCTGGGAGATGCAGTCCAGCTTGCCTGCCTCCCTCCTGCTGGTGAAATCCTACCCAACGGAGCACCCTGTTACATCAGCGGCTGGGGCCGGCTCTCCA
Seq C2 exon
CCAATGGACCTCTGCCAGACAAGCTGCAGCAGGCCTTGCTGCCTGTGGTGGACTATGAACACTGCTCCAGGTGGAACTGGTGGGGCTTGTCTGTGAAGACGACCATGGTGTGCGCCGGCGGCGATATCCAGTCTGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023433-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGAACGTGGTGTGGAG
R:
CAGCCAGACTGGATATCGCC
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: