GgaEX1004807 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFI8]
Coordinates
chr21:6522721-6524396:-
Coord C1 exon
chr21:6524262-6524396
Coord A exon
chr21:6524047-6524183
Coord C2 exon
chr21:6522721-6522866
Length
137 bp
Sequences
Splice sites
3' ss Seq
ACACGTGTCCCCGTGGGCAGGAA
3' ss Score
7.02
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
Exon sequences
Seq C1 exon
CTCCACGCTCACCTACGAGGTGGTGCTGGGTGAGTACGACATGAGCTCCGCCGAAGGCCCCGAGCAGCGCATCCCCGTCGCAGCCGACGACATCTTCGTGCACCCCAAGTGGAACAGGTTCTGCGCGGCCTGCGG
Seq A exon
GAATGACATCGCCCTGCTGAAACTGCGGCGCAATGCTGTGCTCAACGACTACGTGCAGACAGGGCGGCTGCCGCCCGCGGGCACCGTGCTGCCCAATGGCTACCCCTGCTACCTGAGCGGATGGGGGAGGCTGACCA
Seq C2 exon
CGGGGGGACCATTGCCAGACAAACTTCAGGACGCTCTGATGCCTGTGGTGGACCATGAGCAGTGCACACAGCCCGACTGGTGGGGCAGCCTTGCCATCCGCACCACGATGATCTGTGCCGGCGGCGCCGAGCAGGCCGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027189-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACGCTCACCTACGAGG
R:
CAGATCATCGTGGTGCGGATG
Band lengths:
250-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]