BtaEX0008333 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013085 | CELA3B
Description
Bos taurus chymotrypsin-like elastase family, member 3B (CELA3B), mRNA. [Source:RefSeq mRNA;Acc:NM_001166518]
Coordinates
chr2:131427590-131429548:-
Coord C1 exon
chr2:131429414-131429548
Coord A exon
chr2:131428178-131428314
Coord C2 exon
chr2:131427590-131427732
Length
137 bp
Sequences
Splice sites
3' ss Seq
GACTCTTCCCTCCTCCCCAGCAA
3' ss Score
8.2
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GACCTCCCGGACCTACCAGGTGGTGCTGGGCGAGTATGACCGCTCTGTGCTGGAGGGCTCCGAGCAGGTGATACCCATCAACGCCGGGGACCTCTTCGTGCACCCTCTCTGGAACTCCAACTGCGTGGCCTGCGG
Seq A exon
CAACGACATCGCCCTCGTCAAGCTCTCGCGCAGCGCCCAGCTGGGAGACAAGGTCCAGCTTGCCAACCTCCCTCCCGCCGGCGACATCCTGCCCAATGAAGCCCCCTGCTACATCAGCGGCTGGGGCCGTCTCTACA
Seq C2 exon
CTGGCGGGCCGCTGCCGGACAAGCTACAGGAGGCGCTGCTGCCCGTGGTGGACTATGAGCACTGCTCCCAGTGGGACTGGTGGGGCATCAGCGTGAAGAAAACCATGGTGTGCGCCGGCGGGGACACCCGCTCCGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013085-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCCGGACCTACCAG
R:
GCGCACACCATGGTTTTCTTC
Band lengths:
250-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development