DreEX0002621 @ danRer10
Exon Skipping
Gene
ENSDARG00000017314 | CELA1 (1 of 7)
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:HGNC:3308]
Coordinates
chr22:7412480-7413976:+
Coord C1 exon
chr22:7412480-7412605
Coord A exon
chr22:7413592-7413728
Coord C2 exon
chr22:7413834-7413976
Length
137 bp
Sequences
Splice sites
3' ss Seq
TAAACTGTTTTTACTCTCAGATA
3' ss Score
8.48
5' ss Seq
CCAGTAACG
5' ss Score
-0.52
Exon sequences
Seq C1 exon
CTCAAGAACTTGGCGTGTTGTCCTCGGTGAGCACGACATCTACAAACAGGAGGGCCGTGAGCAGTACATGACCGTCAGCAATGTCTACATCCACCCCAACTGGAACAGGAACAACGTGGCTGCTGG
Seq A exon
ATATGATATTGCTCTTCTGCGCCTGTCCTCCAACGCCTCCCTGAACACATACGTGCAGTTGGGCACTCTTCCCCCCTCTGGACAGGTTCTGCCCCACAACAACGCCTGCTACATCACTGGCTGGGGCCTCACTTCCA
Seq C2 exon
CTGGTGGCTCCCTCTCCGCTCAGCTGAAACAGGCCTATCTGCCCGTGGTCGACTACAATACCTGCTCTCGTGGTGACTGGTGGGGAAGCACCGTGAAGAACACCATGGTTTGCGCTGGTGGCGGAAGCCTGTCTGGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017314-'5-9,'5-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(45.6=93.2)
A:
PF0008921=Trypsin=FE(19.8=100)
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGAACTTGGCGTGTTGT
R:
AGCGCAAACCATGGTGTTCTT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]