MmuEX6056542 @ mm9
Exon Skipping
Gene
ENSMUSG00000023031 | Cela1
Description
chymotrypsin-like elastase family, member 1 [Source:MGI Symbol;Acc:MGI:95314]
Coordinates
chr15:100511574-100515136:-
Coord C1 exon
chr15:100515011-100515136
Coord A exon
chr15:100513318-100513454
Coord C2 exon
chr15:100511574-100511719
Length
137 bp
Sequences
Splice sites
3' ss Seq
CGCCATCTTTCCTCCTGCAGCTA
3' ss Score
10.61
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CCCCATGACTTATCGAGTGGTTGTCGGAGAGCACAACCTGAGCCAGAATGACGGCACCGAGCAGTATGTGAACGTGCAGAAGATTGTGTCACACCCCTACTGGAACAAGAACAACGTGGTTGCAGG
Seq A exon
CTATGACATCGCCCTGCTGCGCTTGGCCAAGAGTGTTACACTCAATAACTATGTCCAGCTGGGTGTTCTGCCCCGGGAGGGAACCATCCTGGCTAACAACTCTCCCTGCTACATCACAGGCTGGGGAAGAACCAGAA
Seq C2 exon
CCAATGGGGAGCTGGCCCAGACCCTGCAGCAGGCATACCTGCCCAGCGTGTCCTATAGCATCTGCTCCAGCTCCTCTTACTGGGGCTCCTCTGTGAAGAATACCATGGTGTGCGCTGGTGGAGATGGAGTCCGCTCTGGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023031-'3-5,'3-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.0=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCGGAGAGCACAACCTG
R:
CAGAGCGGACTCCATCTCCA
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: