BtaEX0008331 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008900 | CELA1
Description
Bos taurus chymotrypsin-like elastase family, member 1 (CELA1), mRNA. [Source:RefSeq mRNA;Acc:NM_174048]
Coordinates
chr5:28624837-28627872:+
Coord C1 exon
chr5:28624837-28624962
Coord A exon
chr5:28626135-28626271
Coord C2 exon
chr5:28627727-28627872
Length
137 bp
Sequences
Splice sites
3' ss Seq
AGTCTCCTTTCCACCCACAGTTA
3' ss Score
8.71
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCAAATGACCTTCCGTGTGGTGCTGGGAGACCACAACCTGAGCCAGAACGATGGCACCGAGCAGTACATCAGCGTGCAGAAGATCGTGGTGCATCCATCCTGGAACAGCAACAACGTGGCTGCAGG
Seq A exon
TTACGACATCGCCGTGCTGCGCCTGGCCCAGAGTGCTACCCTCAACAGCTATGTCCAGCTGGGTGTTCTGCCACAGTCGGGAACCATCCTGGCTAACAACACGCCCTGCTACATCACAGGCTGGGGCAGGACTAAGA
Seq C2 exon
CCAATGGGCAGCTGGCCCAGACCCTGCAGCAGGCTTACCTGCCCTCCGTGGACTACGCCACCTGCTCCAGCTCCTCCTACTGGGGCTCCACTGTGAAGACCACCATGGTGTGCGCTGGAGGAGACGGAGTTCGTGCTGGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008900-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.0=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACAACCTGAGCCAGAAC
R:
CTGGCATCCAGCACGAACTC
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development