GgaEX6047193 @ galGal3
Exon Skipping
Gene
ENSGALG00000004866 | CELA1
Description
NA
Coordinates
chrUn_random:935671-937758:+
Coord C1 exon
chrUn_random:935671-935796
Coord A exon
chrUn_random:935886-936022
Coord C2 exon
chrUn_random:937613-937758
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCATCCTCCCCACAGCTA
3' ss Score
10.45
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CAACCGGAATTTCCGCGTCGTCGCCGGCGACCACAACATCTACAAAAGTGAGGGCACCGAGCAGACCTTCGCCGTCAGCAGCATCCACATCCACCCCAGATGGAACAGCAACAACGTGGCCGCGGG
Seq A exon
CTACGACATCGCGCTGCTCCGCCTGTCGGGTTCAGCCACACTCAACAGCTACGTGCAGCTGGCGGTGCTGCCCAGCCAGGGCACAGTGCTGGCCAACAACTATGCCTGCTACATCAGCGGCTGGGGAATGACCAGCA
Seq C2 exon
CCAACGGGCAGCTGTCGAGCGTGCTGCTGCAGGCATACCTGCCCGTCGTGAGCTACAGCACCTGCTCCAGCTACTCCTACTGGGGCTCCACTGTTAAGGACACCATGATCTGCGCTGGTGGGGATGGTGTGCGCTCCGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004866-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.0=100),PF0263810=DUF187=PU(33.3=97.7)
A:
PF0008921=Trypsin=FE(19.7=100),PF0263810=DUF187=FE(36.5=100)
C2:
PF0008921=Trypsin=FE(20.6=100),PF0263810=DUF187=PD(29.4=75.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTTCCGCGTCGTCG
R:
CCACCAGCGCAGATCATGG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]