MmuEX6099287 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23226882-23233890:+
Coord C1 exon
chr2:23226882-23226988
Coord A exon
chr2:23230109-23230246
Coord C2 exon
chr2:23233853-23233890
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAAGTTATTTTTATTTTTAGAAA
3' ss Score
6.5
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATGGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAG
Seq A exon
AAATTCTCTCATGTATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTTGAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGT
Seq C2 exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.3=19.4)
A:
PF136371=Ank_4=PU(87.8=76.6)
C2:
PF127962=Ank_2=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCTCACACCACTCTTGC
R:
TTTCTCTTTCTTAACTCCAAAAGCA
Band lengths:
139-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types