GgaEX7000344 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24067745-24070624:+
Coord C1 exon
chr1:24067745-24067851
Coord A exon
chr1:24068264-24068401
Coord C2 exon
chr1:24070615-24070624
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTTGGATGCTGCAGAAC
3' ss Score
5.74
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAGGGATGTACTCCCCTTACTCTTGCTGTCTCTGAACATCATCAAGAGATGGTAGAGCTCCTTCTTAAAAAAGGAGCTGATGTTAATGCTCGAGATCTGTGTGAAAG
Seq A exon
AACTCCACTTATGACTGCTGCATCCGGTGGGGAGCTTAAGGTGGTAAAAGTTCTTCTTCGCTATGGTGCTGATCTTTCCCATAAAGACACTAATGGATGGACAGCTGAGGATTATGCTATTATTCATGGATATGATAG
Seq C2 exon
GATTCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'3-5,'3-3,4-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(27.3=41.7)
A:
PF138571=Ank_5=PD(70.9=83.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]