DreEX0000436 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3511849-3514862:-
Coord C1 exon
chr25:3514756-3514862
Coord A exon
chr25:3512694-3512831
Coord C2 exon
chr25:3511849-3512035
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTGTTCATTATTAAGGTC
3' ss Score
7.13
5' ss Seq
CGCGTAAGG
5' ss Score
6.44
Exon sequences
Seq C1 exon
GATGGCAACACTCCACTGATGCTGGCTTTGATGGAAAACCACGCAGACATGACGGAGCTTTTACTGAAAGAGGGAGCGGATGTTAATGTCAAGAACCAGGAGCAGCG
Seq A exon
GTCTGCGTTGATGATAGCAGCGTGCAATGGACAAATCAGCATGGTGCGTTTGCTCCTTCAGTATGACGCCGACATTACAGTAAAAGATGACAAGGGATGGTCATCTGATGATTATGCCGTCATGAATGGACACCACGC
Seq C2 exon
ATGTTCACATTTGATCATCGAGCATGGGACGAAGAAAAGAGCCCTCCAGTCACCCTCCCATTTTACCGCCAACAAAAAGAAACGCACATCCGCGCTCGGCAGCCCTGGCGGACTCGGGGCTGGTTTGCCTTTAGGAGGGCCCGCTCTGGATAAAGATGGTATAATAAAGATGGTTTGCATAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.016 C2=0.479
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=91.7),PF127962=Ank_2=PU(7.5=13.9)
A:
PF127962=Ank_2=FE(54.1=100)
C2:
PF127962=Ank_2=PD(18.8=25.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGATGGAAAACCACGC
R:
CATCTTTATCCAGAGCGGGCC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]